Time Series¶
See the GP example for example usage.
Abstract Models¶

class
TimeSeriesModel
(name='')[source]¶ Bases:
pyro.nn.module.PyroModule
Base class for univariate and multivariate time series models.

log_prob
(targets)[source]¶ Log probability function.
Parameters: targets (torch.Tensor) – A 2dimensional tensor of realvalued targets of shape (T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvaluedtargets
at each time stepReturns torch.Tensor: A 0dimensional log probability for the case of properly multivariate time series models in which the output dimensions are correlated; otherwise returns a 1dimensional tensor of log probabilities for batched univariate time series models.

forecast
(targets, dts)[source]¶ Parameters:  targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape
(T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvalued targets at each time step. These represent the training data that are conditioned on for the purpose of making forecasts.  dts (torch.Tensor) – A 1dimensional tensor of times to forecast into the future,
with zero corresponding to the time of the final target
targets[1]
.
Returns torch.distributions.Distribution: Returns a predictive distribution with batch shape
(S,)
and event shape(obs_dim,)
, whereS
is the size ofdts
. That is, the resulting predictive distributions do not encode correlations between distinct times indts
. targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape

Gaussian Processes¶

class
IndependentMaternGP
(nu=1.5, dt=1.0, obs_dim=1, length_scale_init=None, kernel_scale_init=None, obs_noise_scale_init=None)[source]¶ Bases:
pyro.contrib.timeseries.base.TimeSeriesModel
A time series model in which each output dimension is modeled independently with a univariate Gaussian Process with a Matern kernel. The targets are assumed to be evenly spaced in time. Training and inference are logarithmic in the length of the time series T.
Parameters:  nu (float) – The order of the Matern kernel; one of 0.5, 1.5 or 2.5.
 dt (float) – The time spacing between neighboring observations of the time series.
 obs_dim (int) – The dimension of the targets at each time step.
 length_scale_init (torch.Tensor) – optional initial values for the kernel length scale
given as a
obs_dim
dimensional tensor  kernel_scale_init (torch.Tensor) – optional initial values for the kernel scale
given as a
obs_dim
dimensional tensor  obs_noise_scale_init (torch.Tensor) – optional initial values for the observation noise scale
given as a
obs_dim
dimensional tensor

log_prob
(targets)[source]¶ Parameters: targets (torch.Tensor) – A 2dimensional tensor of realvalued targets of shape (T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvaluedtargets
at each time stepReturns torch.Tensor: A 1dimensional tensor of log probabilities of shape (obs_dim,)

forecast
(targets, dts)[source]¶ Parameters:  targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape
(T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvalued targets at each time step. These represent the training data that are conditioned on for the purpose of making forecasts.  dts (torch.Tensor) – A 1dimensional tensor of times to forecast into the future,
with zero corresponding to the time of the final target
targets[1]
.
Returns torch.distributions.Normal: Returns a predictive Normal distribution with batch shape
(S,)
and event shape(obs_dim,)
, whereS
is the size ofdts
. targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape

class
LinearlyCoupledMaternGP
(nu=1.5, dt=1.0, obs_dim=2, num_gps=1, length_scale_init=None, kernel_scale_init=None, obs_noise_scale_init=None)[source]¶ Bases:
pyro.contrib.timeseries.base.TimeSeriesModel
A time series model in which each output dimension is modeled as a linear combination of shared univariate Gaussian Processes with Matern kernels.
In more detail, the generative process is:
\(y_i(t) = \sum_j A_{ij} f_j(t) + \epsilon_i(t)\)The targets \(y_i\) are assumed to be evenly spaced in time. Training and inference are logarithmic in the length of the time series T.
Parameters:  nu (float) – The order of the Matern kernel; one of 0.5, 1.5 or 2.5.
 dt (float) – The time spacing between neighboring observations of the time series.
 obs_dim (int) – The dimension of the targets at each time step.
 num_gps (int) – The number of independent GPs that are mixed to model the time series. Typical values might be \(\N_{\rm gp} \in [\D_{\rm obs} / 2, \D_{\rm obs}]\)
 length_scale_init (torch.Tensor) – optional initial values for the kernel length scale
given as a
num_gps
dimensional tensor  kernel_scale_init (torch.Tensor) – optional initial values for the kernel scale
given as a
num_gps
dimensional tensor  obs_noise_scale_init (torch.Tensor) – optional initial values for the observation noise scale
given as a
obs_dim
dimensional tensor

log_prob
(targets)[source]¶ Parameters: targets (torch.Tensor) – A 2dimensional tensor of realvalued targets of shape (T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvaluedtargets
at each time stepReturns torch.Tensor: a (scalar) log probability

forecast
(targets, dts)[source]¶ Parameters:  targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape
(T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvalued targets at each time step. These represent the training data that are conditioned on for the purpose of making forecasts.  dts (torch.Tensor) – A 1dimensional tensor of times to forecast into the future,
with zero corresponding to the time of the final target
targets[1]
.
Returns torch.distributions.MultivariateNormal: Returns a predictive MultivariateNormal distribution with batch shape
(S,)
and event shape(obs_dim,)
, whereS
is the size ofdts
. targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape

class
DependentMaternGP
(nu=1.5, dt=1.0, obs_dim=1, linearly_coupled=False, length_scale_init=None, obs_noise_scale_init=None)[source]¶ Bases:
pyro.contrib.timeseries.base.TimeSeriesModel
A time series model in which each output dimension is modeled as a univariate Gaussian Process with a Matern kernel. The different output dimensions become correlated because the Gaussian Processes are driven by a correlated Wiener process; see reference [1] for details. If, in addition, linearly_coupled is True, additional correlation is achieved through linear mixing as in
LinearlyCoupledMaternGP
. The targets are assumed to be evenly spaced in time. Training and inference are logarithmic in the length of the time series T.Parameters:  nu (float) – The order of the Matern kernel; must be 1.5.
 dt (float) – The time spacing between neighboring observations of the time series.
 obs_dim (int) – The dimension of the targets at each time step.
 linearly_coupled (bool) – Whether to linearly mix the various gaussian processes in the likelihood. Defaults to False.
 length_scale_init (torch.Tensor) – optional initial values for the kernel length scale
given as a
obs_dim
dimensional tensor  obs_noise_scale_init (torch.Tensor) – optional initial values for the observation noise scale
given as a
obs_dim
dimensional tensor
References [1] “Dependent Matern Processes for Multivariate Time Series,” Alexander VandenbergRodes, Babak Shahbaba.

log_prob
(targets)[source]¶ Parameters: targets (torch.Tensor) – A 2dimensional tensor of realvalued targets of shape (T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvaluedtargets
at each time stepReturns torch.Tensor: A (scalar) log probability

forecast
(targets, dts)[source]¶ Parameters:  targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape
(T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvalued targets at each time step. These represent the training data that are conditioned on for the purpose of making forecasts.  dts (torch.Tensor) – A 1dimensional tensor of times to forecast into the future,
with zero corresponding to the time of the final target
targets[1]
.
Returns torch.distributions.MultivariateNormal: Returns a predictive MultivariateNormal distribution with batch shape
(S,)
and event shape(obs_dim,)
, whereS
is the size ofdts
. targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape
Linear Gaussian State Space Models¶

class
GenericLGSSM
(obs_dim=1, state_dim=2, obs_noise_scale_init=None, learnable_observation_loc=False)[source]¶ Bases:
pyro.contrib.timeseries.base.TimeSeriesModel
A generic Linear Gaussian State Space Model parameterized with arbitrary time invariant transition and observation dynamics. The targets are (implicitly) assumed to be evenly spaced in time. Training and inference are logarithmic in the length of the time series T.
Parameters: 
log_prob
(targets)[source]¶ Parameters: targets (torch.Tensor) – A 2dimensional tensor of realvalued targets of shape (T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvaluedtargets
at each time stepReturns torch.Tensor: A (scalar) log probability.

forecast
(targets, N_timesteps)[source]¶ Parameters:  targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape
(T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvalued targets at each time step. These represent the training data that are conditioned on for the purpose of making forecasts.  N_timesteps (int) – The number of timesteps to forecast into the future from
the final target
targets[1]
.
Returns torch.distributions.MultivariateNormal: Returns a predictive MultivariateNormal distribution with batch shape
(N_timesteps,)
and event shape(obs_dim,)
 targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape


class
GenericLGSSMWithGPNoiseModel
(obs_dim=1, state_dim=2, nu=1.5, obs_noise_scale_init=None, length_scale_init=None, kernel_scale_init=None, learnable_observation_loc=False)[source]¶ Bases:
pyro.contrib.timeseries.base.TimeSeriesModel
A generic Linear Gaussian State Space Model parameterized with arbitrary time invariant transition and observation dynamics together with separate Gaussian Process noise models for each output dimension. In more detail, the generative process is:
\(y_i(t) = \sum_j A_{ij} z_j(t) + f_i(t) + \epsilon_i(t)\)where the latent variables \({\bf z}(t)\) follow generic time invariant Linear Gaussian dynamics and the \(f_i(t)\) are Gaussian Processes with Matern kernels.
The targets are (implicitly) assumed to be evenly spaced in time. In particular a timestep of \(dt=1.0\) for the continuoustime GP dynamics corresponds to a single discrete step of the \({\bf z}\)space dynamics. Training and inference are logarithmic in the length of the time series T.
Parameters:  obs_dim (int) – The dimension of the targets at each time step.
 state_dim (int) – The dimension of the \({\bf z}\) latent state at each time step.
 nu (float) – The order of the Matern kernel; one of 0.5, 1.5 or 2.5.
 length_scale_init (torch.Tensor) – optional initial values for the kernel length scale
given as a
obs_dim
dimensional tensor  kernel_scale_init (torch.Tensor) – optional initial values for the kernel scale
given as a
obs_dim
dimensional tensor  obs_noise_scale_init (torch.Tensor) – optional initial values for the observation noise scale
given as a
obs_dim
dimensional tensor  learnable_observation_loc (bool) – whether the mean of the observation model should be learned or not; defaults to False.

log_prob
(targets)[source]¶ Parameters: targets (torch.Tensor) – A 2dimensional tensor of realvalued targets of shape (T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvaluedtargets
at each time stepReturns torch.Tensor: A (scalar) log probability.

forecast
(targets, N_timesteps)[source]¶ Parameters:  targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape
(T, obs_dim)
, whereT
is the length of the time series andobs_dim
is the dimension of the realvalued targets at each time step. These represent the training data that are conditioned on for the purpose of making forecasts.  N_timesteps (int) – The number of timesteps to forecast into the future from
the final target
targets[1]
.
Returns torch.distributions.MultivariateNormal: Returns a predictive MultivariateNormal distribution with batch shape
(N_timesteps,)
and event shape(obs_dim,)
 targets (torch.Tensor) – A 2dimensional tensor of realvalued targets
of shape